- 3D ALI Databank
- A collection of data which merges protein structural and sequence information
- 3 Dee
- Database of Protein Domain Definitions
- AA CompIdent Tool
- A tool which allows the identification of a protein from
its amino acid composition
ALIGN A Compendium of Protein Sequence Alignments
Analysis of
Protein Multiple Sequence Alignments
Blast Database
A Protein and Nucleic Acid Database
BLOCKSA service for biological sequence analysis at the Fred Hutchinson Cancer Research Center
Brookhaven Protein Databank
Calcium Binding Proteins Database
Developed at the Scripps Research Institute
- CATH
- A Protein Structure Classification Database
Biomolecular Structure and Modelling Unit, University College London.
Colour Interactive Editor for Multiple Alignments
- Dali
- The Dali Domain Dictionary is a structural classification of protein domains.
Data
Analysis and Retrievelwith Indexed Nucleotide/Peptide Sequences
Discrimination
of Protein Secondary Structure Class
- DOMO
- Protein domain database
- DSSP
- Database of Secondary Structure in Proteins
- EBI-MSD
- The EBI Macromolecular Structure Database is the European Project for the collection, management and distribution of data about macromolecular structures.
- European Drosophila Genome Project
- FlyBase
- A Database of Drosophila Genome
- FSSP
- Fold Classification Based on Structure-Structure Alignment of Proteins
Gene Family Identification System
The
G-Protein-Coupled Receptor Database
Heart Science Centre 2-DE Gel Protein Databases
- HSSP
- Homology derived Secondary Structure of Proteins
InterProIntegrated Resource of Protein Domains and Functional Sites
The Kabat Database of Sequences of Proteins of Immunological Interest
MassBankA database of protein mass spectra
- MMDB
-
A Database of 3-D Protein Structures
- ,A HREF="http://srs.ebi.ac.uk/srs5bin/cgi-bin/wgetz?-id+77ksh1DHBb2+-fun+Pagelibinfo+-info+MUTRES">MUTRES
- Mutation Resources List
NRL 3D A
Sequence-Structure Database of Proteins
O-GlycBase
A database of O-glysylated proteins
Owl
A Database of Non-Redundant Protein Sequences
PepFrag A protein Identification database sorted by the pattern of peptides.
- Pfam
- Protein families databse of alignments and HMMs
The Sanger Centre
PRINTS
A Protein Motif Fingerprint Database
- ProClass Database
- A non-redundant protein database organized according to family relationships as defined collectively by ProSite patterns and PIR superfamilies.
- ProDom
- The Protein Domain Database
- ProFound
-
A protein identification by comparison of a peptide map to the OWL Database
- PROSITE
- Database of protein families and domains
Swiss Institute of Bioinformatics
Protein Databank
- Protein Hydrophilicity/Hydrophobicity Search and Comparison
- Provides tools for plotting, comparing and searching a
library for similarities, of a protein's hydropathy profile.
Weizmann Institute of Science Genome and Bioinformatics
Protein
Identification
The Protein
Identification Resource An International Protein Sequence Database
Protein InfoA phylogenetically organized set of sequence databases
- RELIBASE
- ReLiBase is a database system for analysing receptor/ligand complexes deposited in the Protein Data Bank.
Regular Expression Searching
SCOP
A Structural Classification of Proteins Database
SEQUEST
SRSSequence Retrieval System
- Swiss-Prot
-
Annotated Protein Sequence Database
- SWISS-PROT
- Protein Sequence Database produced by Amos Bairoch
-
University of Geneva and the European Bioinformatics Institute
- Swiss-2DPage
- A
Two-dimensional polyacrylamide gel electrophoresis database
- Swiss 3D Image
- A
Database of Biological Macromolecules
- XDOM
- a graphical tool to analyse domain arrangements in any set of protein sequences
Macromolecules
Membranes
Principals of Protein
Structure
Current
Advances in Protein Biochemistry
International
Journal of Peptide and Protein Research
Protein Engineering
Protein Expression and
Purification
Protein Expression and
Purification
Protein and
Peptide Letters
Protein Science
Electronic Edition
Proteins
Structure, Function and Genetics
A Lesson in Protein Synthesis
Presented by the Department of Biology
Georgia College
Atlas of
Protein Side-Chain Interactions
Cellobiohydrolase Animations
Genetic Algorithms and Protein Folding
Introduction
to Proteins
Introduction to Protein Kinases
Library of Lattice Protein Models
Presented by the Scripps Research Institute
Library of Protein Structural Alignments
Molecular Origami
Protein Folding
Principles of Protein
Structure
Prosite Dictionary of
Protein Sites and Patterns
Protein Architecture
Protein Chemistry
and GIF Animations
Protein Data Bank
Brookhaven National Laboratory
Protein
Databank Structures
Protein Fold
Gallery
Protein
Glycosylation
Protein Identification
Resource
Protein Science
Kinemages
Protein Sequence Analysis
Protein Sequence Alignment and Database Scanning
Protein Structure Movies
Protein Structure Prediction
Centre for Protein Engineering
Putative mucin
type O-glycan sites in proteins
Searching Protein Databases
Structural Classification of
Proteins
Virtual Laboratory for
Nucleic Acid and Protein Chemistry
What are Proteins?
Adam Goziak's Group
Scripps Research Institute
Biochemistry &
Protein Structure/Function
Montana State University
The Biologicals, Centre for Molecular Structure and Function
Research School of Chemistry
Australian National University
Centre for Protein
Engineering
Medical Research Council
Chazin Group
The Scripps Research Institute
Chemistry and
Stereochemistry of Peptides and Proteins
University of Wroclaw
Division of Protein Metabolism
Institute for Protein Research
Osaka University
The Edinburgh Center for Protein Technology
The University of Edinburgh
EMBL Protein and
Peptide Group
European Molecular Biology Laboratory
Hemeteam Protein
Chemistry
Institut de Biologie et Chimie des Proteines
Universite Claude Bernard - Lyon
Institute for Protein Research
Osaka University
Laboratory of Prof.Dr.Mathias Sprinzl
Laboratory for Biochemistry
Universitat Bayreuth
Laboratory of
Protein Biophysical Chemistry
Universidade Federal Do Rio De Janeiro
Laboratory of
Protein Chemistry
Moscow State University
Metalloprotein Structure and Design Group
The Scripps Research Institute
Metalloprotein
Structure, Function & Mechanism
University of Montana
Nucleic Acid and Protein
Chemistry Unit
University of Adelaide
Principles of Protein Structure for Recognition, Interaction and Function
The Scripps Research Institute
Protein Biochemistry Group
Heart Science Centre at Harefield Hospital
The Protein and Peptide Science Group
Protein Chemistry
Laboratory
Aarhus University
Protein Chemistry
John Curtin School of Medicine Research
Australian National University
Protein Chemistry
Institute for Protein Research
Osaka University
Protein/DNA
Chemistry Facility
Queen's University
Protein Structure and Engineering Group
University of Sydney
The Protein Structure Group
University of York
Protein/DNA Technology Centre
Rockefeller University
The W. Graham Richards Group
General Protein Mass
Analysis, by Lighthouse Data
LIGPLOT -
Protein Ligand Interactions
MEMSAT-Membrane
Protein Structure and Topology
- NAOMI
- A program for studying the three-dimensional structure of proteins at the atomic level
- The PEP Suite
- Used to calculate electrostatic Green's Functions in a molecule from a finite difference solution to the
Poisson Boltzmann equation.
- Developed by Paul Beroza of the Scripps Research Institute
- Protein Representations Interactively
- A molecular graphics program for the representation of proteins and related structures.
PROCHECK
Checks the Stereochemical quality of Protein Structures
PROCHECK-NMR
Checks the quality of protein structures solved by NMR
PROCOMP
Protein Comparison Software
PROMOTIF
Analysing Protein Structural Motifs
The Protein
Databank
px and the
Threading Analyst
Quest Protein Datbase Centre
- SHIFTS
- A program to estimate chemical shifts in proteins
Threader
Predicts Protein Tertiary Structures
TopWise
A package for protein sequence analysis
